GgaEX7003546 @ galGal4
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2289128-2290651:+
Coord C1 exon
chr4:2289128-2289242
Coord A exon
chr4:2290187-2290441
Coord C2 exon
chr4:2290534-2290651
Length
255 bp
Sequences
Splice sites
3' ss Seq
GTTCTTCCTCTGTATTACAGACA
3' ss Score
8.31
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TACCTGCTTGAGAACAATCGTATGGTGAATATATTTACAGACCTTTACTACCTGACCTTCGTGCAGGAGCTGAACAAGTCCCTGAGTGGCTGGCAACCCACAGTCTTACCAAACA
Seq A exon
ACACAGTCTTCTCACGTGTCGAGGAGGAGCACCTCTGGGAGTGCAAGCAGCTGGGCGTTTACTCACCCTTTGTGCTCCTCAACACCCTTATGTTCTTCAACACTAAGTTCTTTGGGCTGCAGACAGCGGAGGAGCACATGCAGCTCTCCTTCACCAACGTGGTACGGCAGTCCCGCAAGTGCACCACAGCCCGTGGTGTCACCAAGATGGTGAGCATCCGCTACTGCGCTCCTGCCAAGCAGAAGAAAGGCCGAG
Seq C2 exon
ATGGTAGCACTGGAAAGAGGAAGCGTGAGGAGGAGATGCCAATGTTGGAGCAGCGGGAGAACAAGATGAACCCGCTTCGATGCCCCGTCAAGTTCTATGAGTTTTATCTCTCTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533-'36-43,'36-42,38-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.035 C2=0.500
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(49.4=98.8)
C2:
PF120123=DUF3504=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGCTTGAGAACAATCGT
R:
AAAACTCATAGAACTTGACGGGGC
Band lengths:
220-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]