Special

MmuEX0053928 @ mm10

Exon Skipping

Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101405905-101408591:-
Coord C1 exon
chrX:101408477-101408591
Coord A exon
chrX:101407205-101407459
Coord C2 exon
chrX:101405905-101406019
Length
255 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTGTCCATCACAGATA
3' ss Score
10.6
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TATTTGCTGGAAAATAACCGGATGGTGAACATTTTCACGGACCTTTACTACTTGACTTTCGTTCAAGAACTCAACAAGTCTCTGAGTACCTGGCAGCCCACACTCCTCCCCAACA
Seq A exon
ATACTGTATTCTCCCGTGTGGAGGAAGAACACCTCTGGGAGTGCAAGCAACTGGGGGTTTATTCTCCCTTTGTCCTCCTCAATACCCTCATGTTCTTCAACACTAAGTTTTTTGGACTGCAGACAGCTGAGGAACACATGCAACTCTCTTTCACTAATGTGGTACGGCAGTCTCGCAAGTGTACCACGCCTCGGGGCACCACCAAGGTGGTGAGCATCCGCTACTATGCCCCAGTCCGACAGAGGAAAGGGCGAG
Seq C2 exon
ACACAGGTCCTGGGAAACGAAAGAGAGAAGATGAAACTATCTTAGAGCAGCGTGAGAATCGCATGAATCCCCTCCGCTGCCCCGTCAAGTTCTATGAGTTCTATCTCTCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.019 A=0.035 C2=0.436
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF120123=DUF3504=PU(16.5=43.6)

							
A:
PF120123=DUF3504=PU(49.7=98.8)

							
C2:
PF120123=DUF3504=FE(22.2=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000068197





     
                   









    
Main Skipping Isoform:
ENSMUSP00000112497





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000113049, ENSMUSP00000113225
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chrX:71242170-71242424 
HIGH PSI
HsaEX0072897
(ZMYM3)
Human
(hg19)
chrX:70462020-70462274 
HIGH PSI
HsaEX0072897
(ZMYM3)
Rat
(rn6)
chrX:71301625-71301879 
HIGH PSI
RnoEX0102037
(Zmym3)
Cow
(bosTau6)
chrX:84701300-84701554 
HIGH PSI
BtaEX6006451
(ZMYM3)
Chicken
(galGal4)
chr4:2290187-2290441 
HIGH PSI
GgaEX7003546
(ZMYM3)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr9:21622796-21623038 
HIGH PSI
DreEX6036003
(zmym2)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ATTTGCTGGAAAATAACCGGATGG

				
R: 
AGATAGAACTCATAGAACTTGACGGG

				
Band lengths: 
220-475

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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