BtaEX6007610 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017832 | PDK3
Description
Bos taurus pyruvate dehydrogenase kinase, isozyme 3 (PDK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101934]
Coordinates
chrX:125894647-125903093:-
Coord C1 exon
chrX:125902952-125903093
Coord A exon
chrX:125898834-125898905
Coord C2 exon
chrX:125894647-125894831
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACACAGTATCTCTTTTTCAGGTA
3' ss Score
9.13
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GGAGAGATAATGCGTGTGAGAAAACTTCGTATATGTTCCTACGAAAGGAGCTTCCTGTGCGCCTGGCTAACACAATGAGAGAAGTTAATCTTCTGCCGGAGAACTTGCTTAACCGCCCTTCGGTGGGATTGGTTCAGAGCTG
Seq A exon
GTATATGCAGAGTTTTCTTGAACTTCTAGAATATGAAAATAAGAGCCCTGAAGATCCGCAGGTCTTGGATAA
Seq C2 exon
CTTTCTCCAAGTCCTAATTAAAGTCAGAAATAGACACAATGATGTGGTTCCTACAATGGCCCAAGGAGTGATCGAGTACAAGGAGAAGTTTGGGTTTGATCCATTCATTAGCAGTAACATCCAGTATTTTCTGGACCGATTTTATACCAACCGCATCTCTTTCCGCATGCTTATTAACCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017832-'3-3,'3-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGATTGGTTCAGAGCTG
R:
GCGGTTGGTATAAAATCGGTCCA
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]