GgaEX1042839 @ galGal3
Exon Skipping
Gene
ENSGALG00000016323 | Q5ZLT2_CHICK
Description
NA
Coordinates
chr1:121556253-121574390:-
Coord C1 exon
chr1:121574249-121574390
Coord A exon
chr1:121562594-121562665
Coord C2 exon
chr1:121556253-121556437
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATCATCTTCGCTTATTTCAGGTA
3' ss Score
9.48
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GTCGTGACAATGCATGTGAGAAGACTTCCTACATGTTTCTGCGGAAAGAACTTCCCGTGCGGCTAGCTAACACCATGAGAGAAGTCAATTTGTTGCCTGATAACTTACTTAACAGGCCTTCAGTTGGGCTGGTGCAGAGTTG
Seq A exon
GTACATGCAGAGTTTCCTCGAGCTTTTAGAATATGAAAATAAAAGTCCTGAAGATCCTCATGTTCTGGATGA
Seq C2 exon
CTTTTTAGACGTTTTAATTAAAGTCAGGAACAGACACAATGATGTGGTTCCAACCATGGCGCAAGGGGTGATTGAATACAAGGAAAAGTATGGCTTTGACCCATTTGTTAGCAGTAACATCCAGTATTTTCTAGATAGATTCTACACCAACCGCATCTCTTTCCGTATGCTCATTAACCAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016323-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAACTTCCCGTGCGGCTA
R:
TATTCAATCACCCCTTGCGCC
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]