RnoEX6025840 @ rn6
Exon Skipping
Gene
ENSRNOG00000012513 | Pdk3
Description
pyruvate dehydrogenase kinase 3 [Source:RGD Symbol;Acc:1593276]
Coordinates
chrX:62872637-62883791:-
Coord C1 exon
chrX:62883650-62883791
Coord A exon
chrX:62877694-62877765
Coord C2 exon
chrX:62872637-62872821
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTTGACTCTTCCTTTTTAGGTA
3' ss Score
11.75
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAAGGGATAATGCATGTGAAAAAACTTCATACATGTTTCTGCGCAAGGAGCTTCCTGTGCGACTGGCTAACACCATGAGAGAGGTTAATCTTTTGCCGGATAACTTGTTGAACCGCCCATCAGTGGGATTAGTTCAGAGTTG
Seq A exon
GTACATGCAGAGCTTCCTTGAACTTTTAGAATATGAAAACAAGAGCCCAGAAGATCCACGCGTTTTAGATAA
Seq C2 exon
CTTTCTCCACGTTTTGATAAATATCAGAAACAGACACAATGACGTTGTTCCTACAATGGCCCAAGGCGTGATTGAGTACAAGGAAAAGTTCGGGTTTGATCCATTCATTAGCAGTAACATTCAATATTTCCTGGATCGGTTTTATACCAACCGCATTTCTTTCCGCATGCTTATTAACCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012513-'2-6,'2-4,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGTGCGACTGGCTAAC
R:
GTACTCAATCACGCCTTGGGC
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]