GgaEX1042839 @ galGal4
Exon Skipping
Gene
ENSGALG00000016323 | PDK3
Description
[Source:RefSeq peptide;Acc:NP_001006259]
Coordinates
chr1:117544912-117562778:-
Coord C1 exon
chr1:117562637-117562778
Coord A exon
chr1:117551253-117551324
Coord C2 exon
chr1:117544912-117545096
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATCATCTTCGCTTATTTCAGGTA
3' ss Score
9.48
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GTCGTGACAATGCATGTGAGAAGACTTCCTACATGTTTCTGCGGAAAGAACTTCCCGTGCGGCTAGCTAACACCATGAGAGAAGTCAATTTGTTGCCTGATAACTTACTTAACAGGCCTTCAGTTGGGCTGGTGCAGAGTTG
Seq A exon
GTACATGCAGAGTTTCCTCGAGCTTTTAGAATATGAAAATAAAAGTCCTGAAGATCCTCATGTTCTGGATGA
Seq C2 exon
CTTTTTAGACGTTTTAATTAAAGTCAGGAACAGACACAATGATGTGGTTCCAACCATGGCGCAAGGGGTGATTGAATACAAGGAAAAGTATGGCTTTGACCCATTTGTTAGCAGTAACATCCAGTATTTTCTAGATAGATTCTACACCAACCGCATCTCTTTCCGTATGCTCATTAACCAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016323-'9-6,'9-3,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAACTTCCCGTGCGGCTA
R:
TATTCAATCACCCCTTGCGCC
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]