DreEX6085915 @ danRer10
Exon Skipping
Gene
ENSDARG00000099791 | pdk3b
Description
pyruvate dehydrogenase kinase, isozyme 3b [Source:ZFIN;Acc:ZDB-GENE-070112-1892]
Coordinates
chr21:40571780-40576059:+
Coord C1 exon
chr21:40571780-40571921
Coord A exon
chr21:40575608-40575679
Coord C2 exon
chr21:40575875-40576059
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTCTGTGATATCAGGTA
3' ss Score
6.3
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GCAGGGAAAACGCATGTGAAAAAACCTCCTACATGTTTCTGCGGAAAGAACTGGCGGTGAGGTTGGCCAATACGATGAGGGAAGTCACCTTGTTGCCCGACAGTCTCCAGATCCAGCCGTCTGTCAAACTGGTGGAGTCCTG
Seq A exon
GTACAGCCAGAGCTTTGAAGAGCTGTTAAAGTTTGAGAAAAGAAGTCCAGAGGATCCTCACACACTTAATGA
Seq C2 exon
CTTCTTAGAGATGTTGATTAAGATTCGTAACAGGCACAATGACGTGGTGCCCACTATGGCTCAGGGCGTCATTGAATACAAAGAGAAGTTTGGATTTGACCCCTTCATCAGCAGCAACGTGCAGTACTTTCTAGACCGCTTCTACACCAACCGCATTTCTTTCCGCATGCTCATCAACCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099791-'1-4,'1-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=PD(45.4=95.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAACTGGCGGTGAGGTTG
R:
CAATGACGCCCTGAGCCATAG
Band lengths:
172-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]