MmuEX0034273 @ mm9
Exon Skipping
Gene
ENSMUSG00000035232 | Pdk3
Description
pyruvate dehydrogenase kinase, isoenzyme 3 [Source:MGI Symbol;Acc:MGI:2384308]
Coordinates
chrX:91047548-91059407:-
Coord C1 exon
chrX:91059266-91059407
Coord A exon
chrX:91054210-91054281
Coord C2 exon
chrX:91047548-91047732
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGCTGACTTGTGTTTTCTAGGTA
3' ss Score
10.08
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAAGGGATAATGCATGTGAAAAAACTTCCTATATGTTTCTGCGCAAGGAACTTCCTGTGCGACTGGCTAACACCATGAGAGAGGTTAATCTCTTGCCGGATAACTTGTTGAACCGCCCTTCCGTGGGATTAGTTCAGAGCTG
Seq A exon
GTACATGCAGAGCTTCCTTGAACTTTTAGAATATGAAAACAAGAGCCCAGAAGACCCACGAGTTTTGGATAA
Seq C2 exon
CTTTCTCAACGTTCTGATAAATATCAGAAACAGACACAATGATGTTGTTCCTACAATGGCCCAAGGCGTGATTGAGTACAAGGAAAAGTTCGGGTTTGATCCGTTCATTAGCAGTAACATTCAATATTTCCTGGATCGGTTTTATACCAACCGCATTTCTTTCCGCATGCTTATTAACCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035232_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(28.5=100)
A:
PF104364=BCDHK_Adom3=FE(14.5=100)
C2:
PF104364=BCDHK_Adom3=FE(37.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGTGCGACTGGCTAAC
R:
GTACTCAATCACGCCTTGGGC
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: