BtaEX6008375 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4863603-4866109:-
Coord C1 exon
chr2:4865957-4866109
Coord A exon
chr2:4865314-4865412
Coord C2 exon
chr2:4863603-4863697
Length
99 bp
Sequences
Splice sites
3' ss Seq
CACTCGTTTCCTCCTGTTAGCTC
3' ss Score
6.84
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTCTTCGACCGGGAGCTGTGCATCCAGCAGCTGCGCTACTCGGGGATGATGGAGACCGTGCACATCCGCAAATCCGGCTTCCCCATCCGCTACTCGTTCGAGGAGTTCTCACAGAGGTTCCGCGTCCTGCTGCCCAGTGCCGTGCGCACGGAG
Seq A exon
CTCCGGAACAAGTTTCGCCAAATGACCCTGCGCATCGCCGAAAGGTGGCTGGGGACAGATAAAGAATGGAAGATGGGAAAGACCAAGATCTTCCTGAAG
Seq C2 exon
GAAAACCAGGACACCCTGCTGGAGGTACAGAGGAGCCAGGCCCTGGACGAGGCTGCCATCAGAATCCAGAGAGTCCTGCGGGGCTACACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
PF0006316=Myosin_head=FE(4.8=100)
C2:
PF0061222=IQ=PU(76.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCGGGGATGATGGAGACC
R:
GATTCTGATGGCAGCCTCGTC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]