HsaEX0041263 @ hg19
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128350369-128354131:+
Coord C1 exon
chr2:128350369-128350521
Coord A exon
chr2:128351121-128351219
Coord C2 exon
chr2:128354037-128354131
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCCCCGTTTGGTCTTGGCAGCTG
3' ss Score
8.27
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CTGTTCGACCGGGAGCTGTGCCTGCGGCAGCTGCGATACTCGGGCATGATGGAGACCGTGCACATCCGCAAGTCGGGCTTCCCCATCCGCTACACGTTCGAGGAGTTCTCGCAGAGGTTCGGCGTGTTGCTGCCCAACGCCATGCGGATGCAG
Seq A exon
CTGCAAGGCAAGCTCCGCCAGATGACCCTGGGCATCACTGACGTGTGGCTGCGGACAGACAAAGACTGGAAAGCGGGGAAGACAAAAATTTTCCTGAGG
Seq C2 exon
GATCATCAGGACACTCTGCTGGAGGTACAGAGAAGCCAGGTGCTAGACAGAGCGGCGCTCAGCATCCAGAAAGTCCTTCGGGGCTACAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0061222=IQ=PU(76.2=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATGGAGACCGTGCACAT
R:
ACTTTCTGGATGCTGAGCGC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)