MmuEX7008341 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31988512-31990290:-
Coord C1 exon
chr18:31990138-31990290
Coord A exon
chr18:31989482-31989580
Coord C2 exon
chr18:31988512-31988606
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATCCCTGGTTTTCTCAACAGTTT
3' ss Score
9.13
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGTTTGACCGAGAGCTGTGCATTCAGCAGCTGCGTTATTCCGGCATGATGGAGACTGTGCACATCCGCAAGTCAGGTTTTCCCATCCGCTACACATTTGATGAGTTCTCACAGAGATTCCGTGTGCTGCTGCCCAGCCCGGAGCGTATGCAG
Seq A exon
TTTCAGAACAAGCCCCGCCAGATGACCTTGCACATTGCTGACCTATGCCTGGGGACAGACAAAGACTGGAAAGTCGGAAAGACCAAAATCTTCCTGAAG
Seq C2 exon
GATCATCAGGACACAGTGCTGGAGATCCGCAGGAGCCAGGCCCTGGACGGAGCAGCGATCCGGATCCAGAGAGTCCTCCGGGGACACAAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0061222=IQ=PU(75.0=46.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACCGAGAGCTGTGCATTC
R:
TCCAGCACTGTGTCCTGATGA
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types