RnoEX6058337 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24776779-24778489:-
Coord C1 exon
chr18:24778337-24778489
Coord A exon
chr18:24777705-24777803
Coord C2 exon
chr18:24776779-24776873
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATCCCTGATTTTCTCAACAGTTT
3' ss Score
8.76
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGTTTGACCGAGAGCTGTGCATTCAGCAGCTGCGTTATTCCGGCATGATGGAGACCGTGCACATCCGCAAGTCAGGCTTTCCCATCCGCTACACATTCGACGAGTTCTCACAGAGGTTCCGCGTGCTGCTGCCTAGTCCGGAACGTGTGCAG
Seq A exon
TTTCAAAACAAGCACCGCCAGATGACCTCGCGCATTGCTGACCTGTGCCTGGGGACGGACAAAGAGTGGAAAATGGGAAAGACCAAAATCTTCCTGAAG
Seq C2 exon
GATCATCAGGACACAATGCTGGAGATCCAGAGGAGCCAGGCCCTGGATGGAGCAGCGATCCGAATCCAGAGAGTCCTTCGGGGACACAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'23-37,'23-36,25-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0061222=IQ=PU(75.0=46.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATGGAGACCGTGCACAT
R:
ACTCTCTGGATTCGGATCGCT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]