DreEX6022060 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28080256-28082053:+
Coord C1 exon
chr6:28080256-28080414
Coord A exon
chr6:28081275-28081364
Coord C2 exon
chr6:28081959-28082053
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATATAACTGTAATTTTAAAGGAG
3' ss Score
3.76
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTCTTTGACAGGGAGCTGTGTATCCGTCAGCTTCGTTACTCAGGAATGATGGAGACTATCCGCATCAGGAAGGCTGGATATCCCATCCGCCACACATTTGATGAGTTTCTGGAGCGTTACCGTGTGCTGCTCAAGTCCACTGTTTGTGATCCCCAAACT
Seq A exon
GAGACTGTCAAGAAATGTTGTGAAAGCATCTGCAAGATCATCCTGACTGAAGATGACTGGAAGATCGGCAAGACAAAAGTGTTTCTGAAG
Seq C2 exon
GATTTTCACGATACAGTTTTGGAGCTGGCTCGAGACAAGGCTCTTAACGAAAAGGCACTGCTTATTCAGAAAGTCCTGAGAGGATACAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0061222=IQ=PU(76.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCAGCTTCGTTACTCAGG
R:
TAAGAGCCTTGTCTCGAGCCA
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]