GgaEX6045482 @ galGal4
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:850297-851731:+
Coord C1 exon
chr9:850297-850449
Coord A exon
chr9:850965-851063
Coord C2 exon
chr9:851637-851731
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGATGCTTTTGCACATCAGCTG
3' ss Score
2.93
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTGTTTGACCGGGAGCTGTGTATCAAACAGCTGCGATACTCAGGGATGATGGAGACCATTCGGATCAGGAAAGCTGGCTACCCAGTTCGCTACACTTTTGAGGAGTTCTTTGAGAGATACAGAGTTCTCCTGCCGCGGTCTGCTCTAGAACCG
Seq A exon
CTGAAGAATGATGCTCGACAGTGCTGTATCAGAATCTCTGAAGCAGTTCTGGGCAAAGATGAAAGCTGGCAGGCTGGAAAGACCAAGATTTTCCTTAAG
Seq C2 exon
GATTATCATGATACAATATTGGAGTTGGAACGACAGAAGATACTCACAGATAAGGTTCTTCTTATCCAGAAGGTGATGAGAGGATTCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.5=100)
A:
PF0006316=Myosin_head=FE(4.8=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTGCGATACTCAGGGAT
R:
TCTTCTGTCGTTCCAACTCCA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]