BtaEX6008391 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4822686-4824136:-
Coord C1 exon
chr2:4824031-4824136
Coord A exon
chr2:4822960-4823073
Coord C2 exon
chr2:4822686-4822773
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGGGCTGCCTCTCTGCCCAGATG
3' ss Score
8.68
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GACAGGGCCCCGGAAGCAGCCGCCGCACCAGGTGGAGGTGGAGGCCGCTGAGCAGAACGTCTCCCGCATCTGCCACAAGGTCTACTTGCCCAACGACACAAGTGAG
Seq A exon
ATGCTGGAGGTGGGTGCCAACACGCGGGTGCGGGACGCCTGTGACAGCATCGCCGCCCGGCTGCAGCTTGCCTCCTGGGAGGGCTGCAGCCTTTTCATCAAGATCGCAGACAAG
Seq C2 exon
GTCATCAGCCAGAAGGAGGGAGACTTCTTCTTTGACTCCTTGCGGCAAGTGTCCGACTGGGTAAAGAAGAACAAGCCCCAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'50-54,'50-53,51-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGGAGGTGGAGGCC
R:
TCCTTCTGGGGCTTGTTCTTC
Band lengths:
164-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]