HsaEX6015421 @ hg19
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128390833-128392258:+
Coord C1 exon
chr2:128390833-128390938
Coord A exon
chr2:128391751-128391864
Coord C2 exon
chr2:128392171-128392258
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCAGCTGCCTCTCTGTCCAGATG
3' ss Score
8.68
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GACGGGGCCCCGGAAGCAGCCCCCGCACCAGGTGGAGGTGGAGGCCGCAGAGCAGAACGTCTCCCGCATCTGCCACAAGATCTACTTCCCCAATGACACCAGTGAG
Seq A exon
ATGCTGGAGGTGGTTGCCAACACACGGGTGCGGGATGTGTGTGACAGCATTGCCACCAGGCTGCAGCTGGCCTCCTGGGAGGGCTGCAGCCTCTTCATCAAGATTTCAGACAAG
Seq C2 exon
GTCATCAGCCAGAAGGAGGGAGACTTCTTCTTTGATTCCTTGAGGGAGGTGTCTGACTGGGTGAAGAAGAACAAGCCCCAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-'48-55,'48-53,49-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(16.0=47.2),PF093795=FERM_N=PU(8.5=22.2)
A:
PF093795=FERM_N=FE(39.4=100)
C2:
PF093795=FERM_N=FE(30.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGTGGAGGTGGAGG
R:
TCTGGGGCTTGTTCTTCTTCAC
Band lengths:
162-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)