RnoEX6058354 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24749642-24751636:-
Coord C1 exon
chr18:24751531-24751636
Coord A exon
chr18:24750008-24750121
Coord C2 exon
chr18:24749642-24749729
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTGCTACCTCTCTGCACAGACC
3' ss Score
9.3
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGTGGGACCTCGGAAGCAGCCCCCACACCATGTAGAGGTGAAGGCCGCTGAGCAGAATGTCTCCAAACTACACCATGAGGTCTACCTCCCCAATGACACCAATAAG
Seq A exon
ACCTTGGAGGTGAGCAGCAGTAGCCGGGTGCGAGACCTATGTGAGGGCATCGCCACTAGGCTCCAGCTGGCCTCCTGGGATGGCTGCAGCCTCTTCATCAAGATCACAGACAAG
Seq C2 exon
GTCATCAGCCTGAAGGAAGGAGACTTCTTTTTTGACAGCTTGAGGCAGGTATCTGACTGGGTGAAGAAGAACAGGCCCCAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'50-62,'50-61,51-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
A:
PF093795=FERM_N=FE(39.4=100)
C2:
PF093795=FERM_N=FE(30.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGACCTCGGAAGCAG
R:
CTTCTTTCTGGGGCCTGTTCT
Band lengths:
194-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]