DreEX0006143 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28113047-28116636:+
Coord C1 exon
chr6:28113047-28113152
Coord A exon
chr6:28115756-28115869
Coord C2 exon
chr6:28116549-28116636
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTACTTACCCTTCTGGACAGATA
3' ss Score
7.13
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
AATGGATCCCAGAAAACTTCCACCTCACCAGGTTGAGGTTGATGCTATTCAGCAGAACAGCACCCAGATCTTCCACAAAATTTACTTCCCAAATGACTCCCAAGAG
Seq A exon
ATATTTGAGGTGGCAACCAATACTAAGATCAGAGACCTGGTCCGGACCATTGCTAATAAACTCATGCTGTCCACAGCTGAAGGTTTCAGCCTCTTCATGAAAACTCCTGATAAG
Seq C2 exon
GTTCTGAGTTTGAATGAAACAGACTACTTCTTTGACAGCCTCAGACAGATTACTGATTGGTCCAAAAGAGCAAAGAGAGTGAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'39-42,'39-41,41-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(0.2=2.8),PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.4=22.2)
A:
PF093795=FERM_N=FE(38.9=100)
C2:
PF093795=FERM_N=FE(30.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGATCCCAGAAAACTTCCACC
R:
CTTGATTCACTCTCTTTGCTCTTT
Band lengths:
194-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]