GgaEX6045462 @ galGal3
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2307620-2308913:+
Coord C1 exon
chr9:2307620-2307725
Coord A exon
chr9:2307843-2307956
Coord C2 exon
chr9:2308826-2308913
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAAGTCTTGTTGTCTTATAGACA
3' ss Score
6.92
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GAGTGGCTCCAGGAAGTGGGCACCTCATCCTGTGGAGGTTGAGGCCATCTTGCAGAACAACACTAAGATCGCACATAAGATTTGCTTCCCCAATGAAACAGAGCAG
Seq A exon
ACATTTGATGTGGGAACAAACACCAAAAACCGGACTCTATGTCAGAACATCGCTTCCAAACTGCAGCTGAGCTCTTGGGAAGGTTTCAGCCTCTTTGTCAAGATTGCAGACAAG
Seq C2 exon
GTGATCAGTCAGAATGAAGCAGACTATTTCTTTGACTCACTGAGGCAGCTGACAGATTGGACCAAGAGGAACAAACCAGTGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
A:
PF093795=FERM_N=FE(39.4=100)
C2:
PF093795=FERM_N=FE(30.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTCATCCTGTGGAGGTT
R:
TTCACTGGTTTGTTCCTCTTGGT
Band lengths:
170-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]