BtaEX6008876 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18534979-18543605:-
Coord C1 exon
chr2:18543513-18543605
Coord A exon
chr2:18537861-18537983
Coord C2 exon
chr2:18534979-18535032
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTCTTTTCTCTTAGGAA
3' ss Score
11.72
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
AGCATCCACATACTGGAGAGGACTTCTTCCACGAGCACCGAACCCTCTGTAAGTCGGCAACTGCTGGAACCAGAGCCGGTGCCCCTCTCTAAG
Seq A exon
GAAGCTGACAGCTGGGAAATTATAGAAGGACTGAAAATAGGCCAAACCAATGTCCAGAGACCAGACAAACATGAAGGTTTTATGCTAAAGAAGAGAAAATGGCCTTTAAAAGGCTGGCACAAG
Seq C2 exon
CGTTTTTTTGTCCTGGATAATGGAATGTTAAAGTATTCAAAGGCACCACTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405-'6-5,'6-3,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=0.220 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF154091=PH_8=PU(16.7=36.6)
C2:
PF154091=PH_8=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACATACTGGAGAGGACTTCT
R:
TCAAGTGGTGCCTTTGAATACT
Band lengths:
142-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]