MmuEX6102282 @ mm9
Exon Skipping
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76378161-76386429:+
Coord C1 exon
chr2:76378161-76378253
Coord A exon
chr2:76384035-76384157
Coord C2 exon
chr2:76386376-76386429
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTTTTCTCTCAGGAA
3' ss Score
11.15
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
AGCATCCACGTTTTGGAGAGAACTGCTTCATCCAGCACGGAGCCCTCTGTCAGTCGGCAGTTGCTAGAGCCGGAGCCCATCCCCCTCTCCAAG
Seq A exon
GAAGCTGACAGCTGGGAAATTATAGAAGGGCTGAAAATAGGCCAAACCAATGTCCAGAAACCAGACAGGCACGAGGGATTTATGCTGAAGAAAAGAAAATGGCCTTTAAAGGGCTGGCACAAG
Seq C2 exon
CGCTTTTTTGTCCTGGATAATGGAATGCTGAAGTATTCCAAGGCGCCACTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359-'13-12,'13-11,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=0.220 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF154091=PH_8=PU(16.7=36.6)
C2:
PF154091=PH_8=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTTTTGGAGAGAACTGCT
R:
CAAGTGGCGCCTTGGAATACT
Band lengths:
139-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: