HsaEX6016888 @ hg19
Exon Skipping
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:16388]
Coordinates
chr2:179188904-179196332:+
Coord C1 exon
chr2:179188904-179188996
Coord A exon
chr2:179192983-179193105
Coord C2 exon
chr2:179196279-179196332
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTCTTTTCTCTCAGGAA
3' ss Score
11.8
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
AGTATTCACATACTGGAGAGGACTGCTTCCTCTAGCACCGAGCCCTCTGTAAGTCGGCAATTGCTAGAACCGGAGCCAGTCCCCCTCTCCAAG
Seq A exon
GAAGCTGACAGCTGGGAAATTATAGAAGGGCTGAAAATAGGCCAAACCAATGTCCAGAAACCAGACAAACATGAGGGCTTTATGCTGAAGAAAAGAAAATGGCCTTTAAAAGGCTGGCACAAG
Seq C2 exon
CGTTTTTTTGTCCTGGATAATGGAATGTTAAAGTATTCAAAGGCACCACTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156-'8-8,'8-7,9-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.207 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF154091=PH_8=PU(16.7=36.6)
C2:
PF154091=PH_8=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTCACATACTGGAGAGGACTGC
R:
ATCGAGTGGTGCCTTTGAATACT
Band lengths:
146-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)