DreEX6034679 @ danRer10
Exon Skipping
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1427062-1432302:-
Coord C1 exon
chr9:1432050-1432302
Coord A exon
chr9:1427889-1428011
Coord C2 exon
chr9:1427062-1427115
Length
123 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTGTGTGTGTTGTAGGAG
3' ss Score
8.89
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAACTTGTGCAGTAGTTTGACTGGTCATGCTGTGCTTTGGAGGGACGAGAGACACTAAGTAAACAAGCGAGTGGAGAGAAAGAAGAAAAACCGCAGCCTCCATCATGTCCCGCCATCAGAGCCGAACCACCAGCCTGGAGGAGAAAGTGGCCACGCCCATCCACAGAAGCACCGCCCCCTTGCAGAAAAGCTCCACCCCCACGCACAAGAGCGCCTCCTCCTCCTCGTCCTCTCAGAGGGACAGTCGGCAG
Seq A exon
GAGCCGGACAGTTGGGAGATCATCGAGGGTCTGAGGATTGGACAGACTCATGTGCAGCGGCCCGAGAAGCACGAAGGCTTCATGCTGAAGAAGAGGAAGTGGCCTCTGAAGGGCTGGCACAAG
Seq C2 exon
CGTTTCTTCGTCCTGGATAACGGCATCCTGAAGTACTCCAAATCTCCAGTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.293 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
PF154091=PH_8=PU(16.7=36.6)
C2:
PF154091=PH_8=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCATGCTGTGCTTTGGAG
R:
TGCCGTTATCCAGGACGAAGA
Band lengths:
255-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]