RnoEX6017499 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63394442-63403118:+
Coord C1 exon
chr3:63394442-63394534
Coord A exon
chr3:63400693-63400815
Coord C2 exon
chr3:63403065-63403118
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTTTTCTCTCAGGAA
3' ss Score
11.15
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
AGCATCCACGTTCTGGAGAGAACTGCTTCATCCAGCACGGAGCCCTCCATCAGTCGGCAGCTGCTAGAGCCGGAGCCCATCCCCCTCTCCAAG
Seq A exon
GAAGCTGACAGCTGGGAAATTATAGAAGGGCTGAAAATAGGCCAAACCAATGTCCAGAAACCAGACAGGCACGAGGGATTTATGCTGAAGAAGAGAAAATGGCCTTTAAAGGGCTGGCACAAG
Seq C2 exon
CGCTTCTTTGTCCTGGATAACGGAATGTTAAAGTATTCAAAGGCGCCACTTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812-'11-12,'11-10,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.220 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF154091=PH_8=PU(16.7=36.6)
C2:
PF154091=PH_8=FE(18.9=100)
Main Skipping Isoform:
ENSRNOT00000091211fB10128
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGAACTGCTTCATCCAGC
R:
TCAAGTGGCGCCTTTGAATACT
Band lengths:
132-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]