GgaEX6042211 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16558516-16564804:-
Coord C1 exon
chr7:16564709-16564804
Coord A exon
chr7:16561890-16562012
Coord C2 exon
chr7:16558516-16558569
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTTCGTGCTTTTTCAGCAGGAG
3' ss Score
7.28
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AGCGTTAATCTTTTGGAACGGAAGGCTTCGTCAGGAAGCACAGACCCTTCCTTAAGCAAGCAGTTCCTGGAAGCAGACCCTATCTCTCTGTCCAAG
Seq A exon
GAGCCTGACAGCTGGGAAATCATAGAGGGTCTGAAAATTGGCCAGACCAATGTACAGAAGCCAGACAAACATGAAGGCTTCATGCTGAAAAAGAGAAAATGGCCCTTAAAAGGTTGGCACAAG
Seq C2 exon
AGGTTTTTCGTCCTGGATAATGGACTGTTAAAATATTCCAAGTCACCAATTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=0.220 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF154091=PH_8=PU(16.7=36.6)
C2:
PF154091=PH_8=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTAATCTTTTGGAACGGAAGGC
R:
GGTGACTTGGAATATTTTAACAGTCC
Band lengths:
141-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]