BtaEX6008877 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18533523-18535032:-
Coord C1 exon
chr2:18534979-18535032
Coord A exon
chr2:18533811-18533924
Coord C2 exon
chr2:18533523-18533693
Length
114 bp
Sequences
Splice sites
3' ss Seq
AACCAGTCTTTTGATTTCAGATC
3' ss Score
5.9
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CGTTTTTTTGTCCTGGATAATGGAATGTTAAAGTATTCAAAGGCACCACTTGAT
Seq A exon
ATCCAAAAAGGGAAGGTCCATGGAAGCATCGATGTGGGACTCTCTGTCATGTCAATTAAAAAGAAAGCTCGGAGAATAGACCTTGACACAGAAGAACACATCTATCATTTGAAG
Seq C2 exon
GTGAAATCCCAGGACTGGTTTGATGCATGGGTCTCCAAACTGCGCCATCATCGATTGTATCGGCAGAATGAAATTGTGAGATCACCACGAGATGCTAGTTTTCACATATTTCCTTCAACCTCCACAGCTGAATCCTCACCAGCTGCTAATGTTTCAGTTGTGGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.123
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
PF154091=PH_8=FE(41.1=100)
C2:
PF154091=PH_8=PD(18.9=29.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGTCCTGGATAATGGAATGTT
R:
TCCATCCACAACTGAAACATTAGCA
Band lengths:
218-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]