HsaEX0044926 @ hg19
Exon Skipping
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:16388]
Coordinates
chr2:179196279-179197768:+
Coord C1 exon
chr2:179196279-179196332
Coord A exon
chr2:179197368-179197481
Coord C2 exon
chr2:179197598-179197768
Length
114 bp
Sequences
Splice sites
3' ss Seq
TACTAGTCTTTTGATTTCAGATT
3' ss Score
5.51
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
CGTTTTTTTGTCCTGGATAATGGAATGTTAAAGTATTCAAAGGCACCACTCGAT
Seq A exon
ATTCAGAAAGGAAAGGTCCATGGGAGCATAGATGTGGGACTCTCAGTCATGTCAATTAAAAAGAAAGCTCGAAGAATAGACCTTGACACCGAAGAGCACATCTATCATTTGAAG
Seq C2 exon
GTGAAATCCCAGGACTGGTTTGATGCATGGGTCTCCAAACTGCGACATCATCGGTTGTATCGTCAGAATGAAATTGTGAGATCACCAAGAGATGCTAGTTTTCACATATTTCCTTCAACGTCCACAGCTGAATCCTCACCAGCTGCTAATGTTTCTGTAATGGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156-'10-10,'10-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.211
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
PF154091=PH_8=FE(41.1=100)
C2:
PF154091=PH_8=PD(18.9=29.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGTCCTGGATAATGGAATGTT
R:
TCCATCCATTACAGAAACATTAGCA
Band lengths:
218-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)