RnoEX0062523 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63403065-63404517:+
Coord C1 exon
chr3:63403065-63403118
Coord A exon
chr3:63404126-63404239
Coord C2 exon
chr3:63404347-63404517
Length
114 bp
Sequences
Splice sites
3' ss Seq
CACCAATCTGTTGCTTTCAGATC
3' ss Score
8.2
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CGCTTCTTTGTCCTGGATAACGGAATGTTAAAGTATTCAAAGGCGCCACTTGAC
Seq A exon
ATCCAAAAAGGGAAAGTCCACGGGAGCATAGATGTAGGACTGTCTGTCATGTCGATTAAAAAGAAGGCTCGGAGAATAGACCTCGACACAGAGGAGCACATCTATCATTTGAAG
Seq C2 exon
GTGAAATCCCAGGACTGGTTTGATGCCTGGGTCTCCAAACTGCGCCACCACAGGTTGTACCGTCAGAATGAAATCGTGAGGTCACCGAGAGACGCCAGTTTCCACATATTTCCTGCAACGTCAACAGCTGAGTCCTCCCCAGCCGCTAATGTCTCTGTTGTGGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812-'15-15,'15-13,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
PF154091=PH_8=FE(41.1=100)
C2:
PF154091=PH_8=PD(18.9=29.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCTTTGTCCTGGATAACG
R:
TCCACAACAGAGACATTAGCGG
Band lengths:
218-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]