MmuEX6102281 @ mm10
Exon Skipping
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76548319-76549831:+
Coord C1 exon
chr2:76548319-76548372
Coord A exon
chr2:76549440-76549553
Coord C2 exon
chr2:76549661-76549831
Length
114 bp
Sequences
Splice sites
3' ss Seq
CACCGATCTGTTGATTTCAGATC
3' ss Score
7.77
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
CGCTTTTTTGTCCTGGATAATGGAATGCTGAAGTATTCCAAGGCGCCACTTGAT
Seq A exon
ATCCAAAAAGGAAAAGTGCACGGGAGCATAGATGTCGGACTGTCTGTCATGTCGATTAAAAAGAAAGCTCGGAGGATAGACCTTGACACGGAAGAGCACATCTATCATTTGAAG
Seq C2 exon
GTGAAATCCCAGGACTGGTTTGACGCTTGGGTCTCCAAACTGCGCCATCACAGGTTGTACCGTCAGAATGAAATTGTGAGGTCGCCGAGAGATGCCAGTTTCCACATATTTCCTGCAACTTCGACAGCTGAGTCCTCCCCGGCTGCTAATGTCTCTGTTGTGGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359-'30-34,'30-32,31-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.142
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
PF154091=PH_8=FE(41.1=100)
C2:
PF154091=PH_8=PD(18.9=29.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCCTGGATAATGGAATGCTGA
R:
CTTTCCATCCACAACAGAGACA
Band lengths:
218-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types