GgaEX6042212 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16557432-16558569:-
Coord C1 exon
chr7:16558516-16558569
Coord A exon
chr7:16557726-16557839
Coord C2 exon
chr7:16557432-16557596
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCTTTTTGATTTCAGATA
3' ss Score
9.41
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGGTTTTTCGTCCTGGATAATGGACTGTTAAAATATTCCAAGTCACCAATTGAT
Seq A exon
ATACAGAAGGGCAAAGTGCATGGGAGCATTGATGTGGGCTTATCAGTTATGTCCATTAAAAAGAAGGCTCGCAGAATAGATCTTGATACAGAAGAACACATTTATCATCTGAAG
Seq C2 exon
GTGAAGTCCCAGGATACATTCGATGCGTGGGTTTCAAAATTACGCCACCACCGGTTGTACCGTCAGAATGAGATTGTGAGATCTCCAAGAGATGCTAGCTTCCATATATTCCCCTCAGCCTCTACTACAGAGTCTTCACCAGCTGCTAATGTACCAGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.236
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
PF154091=PH_8=FE(41.1=100)
C2:
PF154091=PH_8=PD(18.9=30.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTTTTCGTCCTGGATAATGGA
R:
TGGTACATTAGCAGCTGGTGA
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]