DreEX6034681 @ danRer10
Exon Skipping
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1424765-1427115:-
Coord C1 exon
chr9:1427062-1427115
Coord A exon
chr9:1426596-1426709
Coord C2 exon
chr9:1424765-1424935
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGTCAGATT
3' ss Score
9.98
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
CGTTTCTTCGTCCTGGATAACGGCATCCTGAAGTACTCCAAATCTCCAGTCGAT
Seq A exon
ATTCAGAAAGGAAAGCTTCATGGCAGTATAGATGTGGGTCTGTCTGTGATGTCCATCAAGAAACGAGCTCGCCGCATCGACCTGGACACAGAGGAGCACATTTACCATCTGAAG
Seq C2 exon
GTGAAGTCTCCAGATGTGTTTGACCTCTGGGTGTGTAAGCTGCGTCACCATCGTCTGTTCCGGCAGAATGAGATCGTTCGCTCTCCTCGGGACGCTACGCTACGAACCTTCCCTCCGTCTGCTGGTGCCGAGTCTCCCCAGAACACCCCGTCCAGCACACACCCTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.039 C2=0.465
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
PF154091=PH_8=FE(41.1=100)
C2:
PF154091=PH_8=PD(18.9=29.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGTCCTGGATAACGGCA
R:
TCTTAGGGTGTGTGCTGGACG
Band lengths:
219-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]