BtaEX6008879 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18524498-18533693:-
Coord C1 exon
chr2:18533523-18533693
Coord A exon
chr2:18530500-18530632
Coord C2 exon
chr2:18524498-18524601
Length
133 bp
Sequences
Splice sites
3' ss Seq
CATTTTGCTGTTCGCTGTAGGTG
3' ss Score
9.53
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGAAATCCCAGGACTGGTTTGATGCATGGGTCTCCAAACTGCGCCATCATCGATTGTATCGGCAGAATGAAATTGTGAGATCACCACGAGATGCTAGTTTTCACATATTTCCTTCAACCTCCACAGCTGAATCCTCACCAGCTGCTAATGTTTCAGTTGTGGATGGAAAG
Seq A exon
GTGCAGCCAAACAGCTTTCCATGGCAGTCCCCTCTGCCCTGTAGCAGCAGCCTCCCTGCAACCTGCACAACCGGCCAGAGCAAGGTGGCAGCCTGGCTACAGGACTCGGAAGAGATGGACAGGTGTGCAGAAG
Seq C2 exon
ACCTTGCACACTGCCAGTCGAACCTTGTGGAACTTAGCAAACTCCTGCAAAATTTGGAAATACTTCAGAGAACTCAGTCAGCACCTAACTTTACTGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=0.000 C2=0.114
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=29.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGGTTTGATGCATGGGT
R:
AGGTGCTGACTGAGTTCTCTGA
Band lengths:
246-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]