GgaEX0013481 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16556266-16557596:-
Coord C1 exon
chr7:16557432-16557596
Coord A exon
chr7:16556831-16556963
Coord C2 exon
chr7:16556266-16556369
Length
133 bp
Sequences
Splice sites
3' ss Seq
AGCATTTTATTATACCTTAGGTA
3' ss Score
6.61
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTGAAGTCCCAGGATACATTCGATGCGTGGGTTTCAAAATTACGCCACCACCGGTTGTACCGTCAGAATGAGATTGTGAGATCTCCAAGAGATGCTAGCTTCCATATATTCCCCTCAGCCTCTACTACAGAGTCTTCACCAGCTGCTAATGTACCAGATGGAAAG
Seq A exon
GTACAACAAAATAGCTTCCCATGGCAATCTCCTATACCTTGCAGTAACAGCCTTCCTGCAACCTGCACTACTGGGCAGAGTAAAGTAGCAGCCTGGTTGCAGGACTCAGAAGAGATGGACAGATGTGCAGAAG
Seq C2 exon
ATCTTGCTCATTGTCAGTCAAACCTTGTGGAACTCAGTAAACTTCTTCAAAATTTAGAAATACTACAGAGAACTCAGTCTGCACCGAATTTCACAGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'14-13,'14-12,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=0.100 C2=0.107
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=30.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATACATTCGATGCGTGGG
R:
TCGGTGCAGACTGAGTTCTCT
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]