MmuEX6102279 @ mm10
Exon Skipping
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76549661-76564949:+
Coord C1 exon
chr2:76549661-76549831
Coord A exon
chr2:76552118-76552250
Coord C2 exon
chr2:76564784-76564949
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGCTTCATCTCTGCTTGTAGATG
3' ss Score
8.61
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTGAAATCCCAGGACTGGTTTGACGCTTGGGTCTCCAAACTGCGCCATCACAGGTTGTACCGTCAGAATGAAATTGTGAGGTCGCCGAGAGATGCCAGTTTCCACATATTTCCTGCAACTTCGACAGCTGAGTCCTCCCCGGCTGCTAATGTCTCTGTTGTGGATGGAAAG
Seq A exon
ATGCAGCCCAACAGCTTTCCATGGCAGTCGCCATTACCATGCAGTAACAGCCTCCCTGCGACCTGCACAACTGGGCAGAGTAAAGTGGCAGCCTGGCTGCAGGACTCAGAAGAAATGGACAGGTGTGCAGAAG
Seq C2 exon
GTTCCTTTCAGCGCCACCATGTCACCCGTGCGTCTGCACTCCTCCAACCCCAACCTTTGTGCAGACATTGAGTTCCAGACCCCTCCTAGCCACCTCACCGACCCTCTGGAAAGTTCCACGGATTATACCAAGCTACAAGAAGAATTTTGTCTAATTGCACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359_MULTIEX1-13/23=12-19
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=0.046 C2=0.363
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=29.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCACAGGTTGTACCGTC
R:
AACTTTCCAGAGGGTCGGTGA
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types