RnoEX0062531 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63404347-63421257:+
Coord C1 exon
chr3:63404347-63404517
Coord A exon
chr3:63408997-63409129
Coord C2 exon
chr3:63421092-63421257
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTTCATCTCCTTGCTTGTAGATG
3' ss Score
8.34
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTGAAATCCCAGGACTGGTTTGATGCCTGGGTCTCCAAACTGCGCCACCACAGGTTGTACCGTCAGAATGAAATCGTGAGGTCACCGAGAGACGCCAGTTTCCACATATTTCCTGCAACGTCAACAGCTGAGTCCTCCCCAGCCGCTAATGTCTCTGTTGTGGATGGAAAG
Seq A exon
ATGCAGCCTAGCAGCTTTCCATGGCAGTCCCCCTTACCATGCAGTAACAGCCTCCCTGCGACCTGCACGACTGGGCAGAGTAAGGTGGCAGCCTGGCTGCAGGACTCAGAAGAAATGGACCGGTGTGCGGAAG
Seq C2 exon
GTTCCTTTCAGCGCCACCATGTCACCCGTGCGTCTGCACTCCTCCAACCCCAACCTTTGTGCAGACATTGAGTTTCAGACCCCTCCTAGCCACCTCACCGACCCTCTGGAAAGTTCCACAGATTATACCAAGCTACAAGAAGAATTTTGTCTAATTGCGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812_MULTIEX3-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.362
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=29.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTTGATGCCTGGGTCTC
R:
GGCTAGGAGGGGTCTGAAACT
Band lengths:
248-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]