HsaEX6016886 @ hg38
Exon Skipping
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:178332871-178339094:+
Coord C1 exon
chr2:178332871-178333041
Coord A exon
chr2:178336301-178336422
Coord C2 exon
chr2:178338991-178339094
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTCATCTTTGTTTGCCGTAGATG
3' ss Score
10.22
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GTGAAATCCCAGGACTGGTTTGATGCATGGGTCTCCAAACTGCGACATCATCGGTTGTATCGTCAGAATGAAATTGTGAGATCACCAAGAGATGCTAGTTTTCACATATTTCCTTCAACGTCCACAGCTGAATCCTCACCAGCTGCTAATGTTTCTGTAATGGATGGAAAG
Seq A exon
ATGCAACCAAACAGCTTTCCGTGGCAGTCCCCTTTACCATGCAGCAATAGCCTCCCTGCAACGTGCACAACTGGCCAGAGTAAAGTGGCAGCCTGGTTACAGGACTCGGAAGAGATGGACAG
Seq C2 exon
ATCTTGCACATTGCCAGTCAAACCTTGTGGAACTTAGCAAACTCCTGCAAAATTTGGAAATACTTCAGAGAACTCAGTCGGCACCTAACTTTACTGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156_MULTIEX1-12/15=11-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.089 C2=0.079
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=29.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGGTTTGATGCATGGGT
R:
TAGGTGCCGACTGAGTTCTCT
Band lengths:
247-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains