DreEX6034683 @ danRer10
Exon Skipping
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1422093-1424935:-
Coord C1 exon
chr9:1424765-1424935
Coord A exon
chr9:1423254-1423362
Coord C2 exon
chr9:1422093-1422196
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTCAGCAGGGT
3' ss Score
7.74
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGAAGTCTCCAGATGTGTTTGACCTCTGGGTGTGTAAGCTGCGTCACCATCGTCTGTTCCGGCAGAATGAGATCGTTCGCTCTCCTCGGGACGCTACGCTACGAACCTTCCCTCCGTCTGCTGGTGCCGAGTCTCCCCAGAACACCCCGTCCAGCACACACCCTAAGAAG
Seq A exon
GGTAAACCCAGTAGTTTTCCCTGGCAGCTGCCGCCGTCCTGCAGTAACGGGCAGAGTAAAGTGGCAGCCTGGTTGCAGGAGTCAGAGGAGATGGACAAATGTGCAGAAG
Seq C2 exon
AGCTCGCCTACTGCCAGTCCAGTCTTTTAGAGCTGAATCAACTTCTGCAGAGTCTGGAGATCTTACAGAGGACACAGTCAGCTCCCAACTTCACTGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=0.383 C2=0.114
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=29.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTAAGCTGCGTCACCATC
R:
TGCATGTCAGTGAAGTTGGGA
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]