BtaEX6008903 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016396 | PDE11A
Description
Bos taurus phosphodiesterase 11A (PDE11A), mRNA. [Source:RefSeq mRNA;Acc:NM_001205422]
Coordinates
chr2:19179117-19195197:+
Coord C1 exon
chr2:19179117-19179207
Coord A exon
chr2:19182721-19182821
Coord C2 exon
chr2:19195120-19195197
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTTTACTTTCTCGTTCCAGGGT
3' ss Score
10.94
5' ss Seq
TGAGTAGGT
5' ss Score
3.27
Exon sequences
Seq C1 exon
GAGTGGCTCTGCCCTGGCCCAACTCTATGGAACCTCTGCCACCTTAGAGCATCACCATTTCAACCATGCAGTGATGATCCTTCAGAGCGAG
Seq A exon
GGTCACAACATCTTTGCTAATTTGTCCTCCAAGGAATACAGTGACCTTATGCAGCTTTTGAAGCAGTCAATCCTGGCAACAGACCTCACGCTGTACTTTGA
Seq C2 exon
AAGGAGAACGGAATTCTTCGAACTTGTCAGTAAAGGAGAATATGATTGGAACATCAAAAACCATCGTGATATATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016396-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.5=100)
A:
PF0023314=PDEase_I=FE(13.8=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCCTGGCCCAACTCTA
R:
ATCACGATGGTTTTTGATGTTCCA
Band lengths:
154-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]