DreEX6034701 @ danRer10
Exon Skipping
Gene
ENSDARG00000063732 | pde11a
Description
phosphodiesterase 11a [Source:ZFIN;Acc:ZDB-GENE-070912-207]
Coordinates
chr9:1555169-1562980:+
Coord C1 exon
chr9:1555169-1555259
Coord A exon
chr9:1560470-1560570
Coord C2 exon
chr9:1562903-1562980
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGTCTGTGTTTAGGGT
3' ss Score
10.03
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GACGGGATCAGCTCTTTCTCTTCTTTACGGGACGTCAGCAACACTAGAGCACCATCATTTCAACCACGCGGTGATGATCCTGCAGAGCGAG
Seq A exon
GGTCACAACATCTTCTCCAATCTGTCGTCACATGAGTATGGAGAACTGATGCAGCTCCTCAAGCAGTCCATACTGGCCACAGACTTAACCCTCTACTTTCA
Seq C2 exon
GAACAGAAACTCTTTCTTTGAGCTGGTGAATAAAGGCGAATACAACTGGAACGTGAAGGAGCACAGAGAGATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063732-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.5=100)
A:
PF0023314=PDEase_I=FE(13.8=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGATCAGCTCTTTCTCT
R:
TCTCTCTGTGCTCCTTCACGT
Band lengths:
162-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]