MmuEX6102253 @ mm10
Exon Skipping
Gene
ENSMUSG00000075270 | Pde11a
Description
phosphodiesterase 11A [Source:MGI Symbol;Acc:MGI:3036251]
Coordinates
chr2:76030924-76050230:-
Coord C1 exon
chr2:76050140-76050230
Coord A exon
chr2:76046779-76046879
Coord C2 exon
chr2:76030924-76031001
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTTCTGCCTTCTCATTACAGGGT
3' ss Score
9.8
5' ss Seq
TGAGTAGGT
5' ss Score
3.27
Exon sequences
Seq C1 exon
GAGTGACTCTGCACTGGCCCAGCTCTACGGGACCTCGGCGACCTTGGAGCATCACCATTTTAACCATGCTGTGATGATCCTTCAGAGTGAG
Seq A exon
GGTCACAACATCTTTGCTAATTTGTCCTCCAAGGAATACAGTGACCTCATGCAGCTCCTGAAGCAGTCAATATTAGCCACAGACCTCACGCTCTACTTTGA
Seq C2 exon
GAGAAGAACTGAGTTCTTCGAGCTTGTCAGGAAAGGAGACTACGATTGGAGCATCACAAGCCACCGAGATGTGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075270-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.5=100)
A:
PF0023314=PDEase_I=FE(13.8=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGACTCTGCACTGGCC
R:
GAACACATCTCGGTGGCTTGT
Band lengths:
167-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types