GgaEX6042226 @ galGal3
Exon Skipping
Gene
ENSGALG00000009215 | PDE11A
Description
NA
Coordinates
chr7:16751271-16757783:+
Coord C1 exon
chr7:16751271-16751361
Coord A exon
chr7:16754354-16754454
Coord C2 exon
chr7:16757706-16757783
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTTTATCTCTTTCATTATAGGGT
3' ss Score
9.79
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GAGCGGATCAGCCTTAGCTCAGCTCTACGGCACCTCTGCTACCTTGGAGCACCACCATTTCAATCATGCTGTCATGATTCTCCAAAGTGAG
Seq A exon
GGTCACAACATCTTTGCTAACTTGTCCTCTAAGGACTACAGTGACCTTATGCAGCTTCTAAAGCAATCGATATTGGCAACAGACCTCACGCTGTATTTTGA
Seq C2 exon
GAGAAGGACAGAATTCTTTGAACTTGTCGGTAAAGGTGGTTATGATTGGAATGTTAAAAACCATCGAGAAATATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009215-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.5=100)
A:
PF0023314=PDEase_I=FE(13.8=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGATCAGCCTTAGC
R:
TTTCTCGATGGTTTTTAACATTCCA
Band lengths:
162-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]