RnoEX0064214 @ rn6
Exon Skipping
Gene
ENSRNOG00000024457 | Pde11a
Description
phosphodiesterase 11A [Source:RGD Symbol;Acc:621793]
Coordinates
chr3:62858842-62878006:-
Coord C1 exon
chr3:62877916-62878006
Coord A exon
chr3:62874573-62874673
Coord C2 exon
chr3:62858842-62858919
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTTCTACCTGCTCATTACAGGGT
3' ss Score
6.71
5' ss Seq
CGAGTAGGT
5' ss Score
5.76
Exon sequences
Seq C1 exon
GAGTGACTCTGCACTGGCCCAGCTCTATGGGACCTCAGCGACCTTAGAGCATCACCACTTTAACCACGCCGTGATGATCCTTCAGAGTGAG
Seq A exon
GGTCACAACATCTTTGCTAATTTGTCCTCCAAGGAATACAGCGACCTCATGCAGCTCCTGAAGCAGTCGATACTAGCCACTGACCTCACGCTGTACTTCGA
Seq C2 exon
GAGAAGAACTGAGTTCTTCGAGCTTGTCAGTAAAGGAGCCTATGATTGGAGCATCACAAGTCACCGCGATGTGTTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024457_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.5=100)
A:
PF0023314=PDEase_I=FE(13.8=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGACTCTGCACTGGCC
R:
AAACACATCGCGGTGACTTGT
Band lengths:
167-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]