BtaEX6008917 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009897 | AGPS
Description
Bos taurus alkylglycerone phosphate synthase (AGPS), mRNA. [Source:RefSeq mRNA;Acc:NM_001206719]
Coordinates
chr2:19421723-19433177:-
Coord C1 exon
chr2:19433086-19433177
Coord A exon
chr2:19424596-19424686
Coord C2 exon
chr2:19421723-19421843
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTTACTTCTTTTTACCTTAGGTA
3' ss Score
10.38
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGGCAAGAAGTTATGAAATGGAATGGATGGGGATATAATGATTCCAAGTTCATCTTCAATAAGAAAGGACAAATTGAGTTGACTGGGAAAAG
Seq A exon
GTACCCTCTTAGTGGCATGTCATTGCCAACTTTTAGAGAGTGGATCCAAAATACCCTTGGAGTAAATGTGGAGCATAAAACTACCTCTAAA
Seq C2 exon
GCCTCCTTAAATCCTAGTGATACACCTCCTTCTATTGTAAGTGAAGATTTTCTTCATGACCTTAAAGAAACTAATATTTCATATTCACAAGAAGCAGATGATCGAGTATTTAGAGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009897-'1-3,'1-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.097 C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGGGATATAATGATTCCAAGT
R:
ACTCGATCATCTGCTTCTTGTGA
Band lengths:
176-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]