GgaEX1007022 @ galGal3
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
NA
Coordinates
chr7:16854305-16860655:-
Coord C1 exon
chr7:16860566-16860655
Coord A exon
chr7:16857512-16857602
Coord C2 exon
chr7:16854305-16854425
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATGTAATATTGACTTTTCAGGTA
3' ss Score
7.93
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCAAGAAATTCTGAAGTGGAATGGATGGGGATATAATGACTCCAAATTCATATTCAATAAGAAGGGTCAAGCAGAATTCACAGGAAAGAG
Seq A exon
GTACAGATTAGGTGGTATGGTATTACCAACTTTTAAAGAATGGATAGAAAGAACCTTTGGAGCAAGTCTGGAGCACAAAACTACCTCTAGA
Seq C2 exon
GCATCTTTAAATGTTAATGATGTACCTCCATCTATTGTAAATGAAGAATTTCTTCAGGATCTCAGAGCCACTAAAATTTCATATTCACAGGATGCAGAAGATAGGGTATTCAGAGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'4-6,'4-3,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAGTGGAATGGATGGGGA
R:
TCTTCTGCATCCTGTGAATATGA
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]