DreEX6034713 @ danRer10
Exon Skipping
Gene
ENSDARG00000042821 | agps
Description
alkylglycerone phosphate synthase [Source:ZFIN;Acc:ZDB-GENE-031118-14]
Coordinates
chr9:1624991-1627250:-
Coord C1 exon
chr9:1627161-1627250
Coord A exon
chr9:1625272-1625362
Coord C2 exon
chr9:1624991-1625111
Length
91 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTTGTCTTTAGGTA
3' ss Score
12.39
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCAGGAAATCATGAAGTGGAACGGCTGGGGTTACAGCGACTCAAGATTTCTGTTTAATAAAAAGGGTCAAGCAGAGTTCACAGGCAAACG
Seq A exon
GTATCGGTTGAGTGGGTTGATTCTGCCGAGTCTGAAGGACTGGTTTGAAGGGACGTTTGGAGCCAGTTTACAGCATAAATCTCCTGCTACT
Seq C2 exon
TCGTCTCTGAATGTGAGCGCAGTGTCGCCTCCAAACCTGAATGAAGCATTCTCTGAGGATCTGAAAGCTGCAGGTCTGCTGGCGTCTCATGATGCGGAGGATCGGGTTTTCCGAGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042821-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
86%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.032 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTTACAGCGACTCAAGA
R:
GATCCTCCGCATCATGAGACG
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]