RnoEX0007976 @ rn6
Exon Skipping
Gene
ENSRNOG00000001547 | Agps
Description
alkylglycerone phosphate synthase [Source:RGD Symbol;Acc:620364]
Coordinates
chr3:62666948-62669694:+
Coord C1 exon
chr3:62666948-62667037
Coord A exon
chr3:62668155-62668245
Coord C2 exon
chr3:62669574-62669694
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTATCTACTTTGTGCCTTAGGTA
3' ss Score
9.17
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GCAAGAACTTATGAAATGGAATGGATGGGGCTATAATGATTCCAAGTTCTTACTGAATAAGAAGGGCCAGGTTGAGCTGACTGGGAAAAG
Seq A exon
GTACCCTCTTAGTGGCTTGGCTTTACCAACTTTGAAAGACTGGATCCAAAACACCCTTGGAGTAAATCTGGAGCATAAAACTACCTCTAAA
Seq C2 exon
CCATCCATAAATCCTAGTGAAGCACCTCCTTCTATTGTGAATGAAGATTTCCTTCAGGAACTTAAAGAAGCTCATATTTCCTACTCACAAGACGCAGATGATCGTGTGTTTAGAGCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001547-'9-6,'9-5,11-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.194 C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATGGAATGGATGGGGCT
R:
CGATCATCTGCGTCTTGTGAGT
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]