GgaEX1007022 @ galGal4
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr7:15253179-15259529:-
Coord C1 exon
chr7:15259440-15259529
Coord A exon
chr7:15256386-15256476
Coord C2 exon
chr7:15253179-15253299
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATGTAATATTGACTTTTCAGGTA
3' ss Score
7.93
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCAAGAAATTCTGAAGTGGAATGGATGGGGATATAATGACTCCAAATTCATATTCAATAAGAAGGGTCAAGCAGAATTCACAGGAAAGAG
Seq A exon
GTACAGATTAGGTGGTATGGTATTACCAACTTTTAAAGAATGGATAGAAAGAACCTTTGGAGCAAGTCTGGAGCACAAAACTACCTCTAGA
Seq C2 exon
GCATCTTTAAATGTTAATGATGTACCTCCATCTATTGTAAATGAAGAATTTCTTCAGGATCTCAGAGCCACTAAAATTTCATATTCACAGGATGCAGAAGATAGGGTATTCAGAGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236_MULTIEX1-1/14=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAGTGGAATGGATGGGGA
R:
TCTTCTGCATCCTGTGAATATGA
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]