HsaEX0003135 @ hg19
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:327]
Coordinates
chr2:178284997-178301612:+
Coord C1 exon
chr2:178284997-178285086
Coord A exon
chr2:178299055-178299145
Coord C2 exon
chr2:178301492-178301612
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTACTTTCTTTGTACCTTAGGTA
3' ss Score
9.88
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GCAAGAAGTTATGAAATGGAATGGATGGGGATATAATGATTCTAAATTCATCTTCAATAAGAAGGGCCAAATTGAATTGACTGGGAAAAG
Seq A exon
GTACCCTCTTAGTGGCATGGGTTTACCAACATTTAAAGAATGGATCCAAAATACCCTTGGAGTAAATGTGGAGCATAAAACTACCTCTAAA
Seq C2 exon
GCATCCTTAAATCCTAGTGATACACCTCCTTCTGTTGTAAATGAAGATTTTCTTCATGACCTTAAAGAAACTAATATTTCATATTCACAAGAGGCAGATGATCGAGTATTTAGAGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510-'1-3,'1-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.161 C2=0.220
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=PU(1.4=3.2)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATGGAATGGATGGGGAT
R:
CGATCATCTGCCTCTTGTGAA
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)