BtaEX6008920 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009897 | AGPS
Description
Bos taurus alkylglycerone phosphate synthase (AGPS), mRNA. [Source:RefSeq mRNA;Acc:NM_001206719]
Coordinates
chr2:19415481-19418551:-
Coord C1 exon
chr2:19418480-19418551
Coord A exon
chr2:19416851-19416930
Coord C2 exon
chr2:19415481-19415561
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATTATCTTCTATTTTGGCAGGAG
3' ss Score
6.86
5' ss Seq
ATGGTATAT
5' ss Score
3.91
Exon sequences
Seq C1 exon
CATGTCATGATGATGTAGTTAAGATTGTGAATCTAGCGTGCAAATATAACCTTTGTATCATACCAATTGGTG
Seq A exon
GAGGAACAAGTGTTTCGTATGGCCTGATGTGTCCTGCAGATGAGACAAGAACAATTATTTCTTTAGACACTTCACAAATG
Seq C2 exon
AATCGTATCCTCTGGGTTGATGAAAACAATCTGACAGCTCATGTAGAGGCTGGCATAACAGGACAAGAATTGGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009897-'9-9,'9-7,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(16.8=100)
A:
PF0156518=FAD_binding_4=FE(18.2=100)
C2:
PF0156518=FAD_binding_4=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGTGAATCTAGCGTGCA
R:
TGTCTTTCCAATTCTTGTCCTGT
Band lengths:
131-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]