HsaEX6016843 @ hg19
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:327]
Coordinates
chr2:178305693-178310354:+
Coord C1 exon
chr2:178305693-178305764
Coord A exon
chr2:178307135-178307214
Coord C2 exon
chr2:178310274-178310354
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTCCTATTTTGGCAGGAG
3' ss Score
5.92
5' ss Seq
ATGGTATTT
5' ss Score
3.85
Exon sequences
Seq C1 exon
CATGCCATGATGATGTAGTTAAGATTGTGAATCTAGCTTGCAAATATAATCTTTGTATCATACCAATTGGTG
Seq A exon
GAGGAACAAGTGTTTCATATGGCCTGATGTGTCCTGCAGATGAGACAAGAACAATTATTTCTTTGGACACTTCACAAATG
Seq C2 exon
AATCGAATTCTCTGGGTTGATGAGAACAATTTGACAGCTCATGTAGAGGCTGGCATAACAGGACAAGAGTTGGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510-'6-9,'6-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(16.8=100)
A:
PF0156518=FAD_binding_4=FE(18.2=100)
C2:
PF0156518=FAD_binding_4=FE(18.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATGATGATGTAGTTAAGATTGT
R:
CTGTCTTTCCAACTCTTGTCCTGT
Band lengths:
151-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)